"The following modules are missing or built with a different engine version" with a new project

As another test, try turning your antivirus software off and then running the engine. That way you know if for some reason it isn’t properly excluding the files, or if there is another issue here.

If it runs successfully, then we will know that there may be other files you need to exclude. If it does not run successfully, we can continue to investigate this issue and get you all set up.