Sequencer Effects look too fast when rendered out

Looks I have the same problem. When I make renders through render queue and I make engine warm up or other settings in anti-aliasing section the water and other FX start moving faster than expected. What is wrong in settings. When I put warm ups or sample count settings to 0 everything in render looks fine and moves in right tempo. I look up on net about such issues but I don’t get the correct answers. Any ideas what’s wrong?