Project settings doesn't save between sessions?

Seems like the project settings are not stored between sessions anymore after having upgraded from 4.2 to 4.3?
I always have to revert my project Project Settings → Engine Input → Console Key (to the button ‘|’, same as paragraph button on Northern European keyboards). Between sessions now it reverts to ‘None’. It remembers my other saved states from the 4.2 days such as my ‘Interact’ action mapping.

Similarly Quick Settings → Engine Scalability Settings reverts to Medium between sessions (which I changed to one point in time when in 4.2) even though I want it to stay at Epic currently (have a very capable system, Epic runs at *>120fps).

The worst is that when changing the input in the project settings, my packaged and launch builds don’t have these input changes applied.

Maybe it simply could be that there’s a (projectfile) update process when updating versions? I looked around for this when I decided to move from 4.2 to 4.3 but didn’t find anything.

Hi Wollan,

Thank you for your report. We were not able to investigate this on the engine version you reported, but there have been many version changes to UE4 since this question was first posted. With a new version of the Engine comes new fixes and it is possible that this issue has changed or may no longer occur. Due to timetable of when this issue was first posted, we are marking this post as resolved for tracking purposes. If you are still experiencing the issue you reported in the current engine version, then please respond to this message with additional information and we will investigate as soon as possible. If you are experiencing a similar, but different issue at this time, could you please submit a new report for it.