What are the values of the coordinates? If above (maybe) 100 000, the distance from the coordinate system origin is too far and the models are deformed. This can be solved by reducing the coordinates or set this reduction during exporting.
For example you can use Shifted project output option, which is same as Project output, just moved to the center of a reconstruction:
or Scene transformation using Move for X, Y and Z with your values:
Like reduce 532 645.12 to 645.12.
Did you have the same export settings for both formats?