No this is a fresh import of the model. I am thinking it has something to do with the scale of the model itself. Somewhere along the way there is a bug with the collision appearing in the right location for small objects. Guess I am just going to have to import it at a larger scale and size it down from there, see if the same issue reappears or not.
Its only happening with the smaller this size and smaller models. 2x this size and above generate collision meshs that are good and fit the model.