This is a big issue for Linux users, because Linux compatibility is more often not set than it is.
But packs that are Meshes/Materials/Blueprint always worked for me in Linux. No matter if Linux compatibility was set. The only thing that might be a Problem is C++ Plugins. They only work when they provide the source, and sometimes some manual fixes are needed.
It might be a better solution to show a Message that the asset might not be compatible, but allow the user to import it anyways.