Exported masks - wrong scaled

Are you sure you have used the correct workflow here? To make sure, I will describe it below.
Import images
Align
Reconstruct
Filter out everything that is not a real part of the model (the subject you are shooting) 
Once there is only your subject as a model you export the masks.

If this is something you’ve done then did you also try to reexport them? Possibly the files have been interrupted while being written down.