Can't open project after rebuilding engine

So I was following this guide to set up CLion as my editor but after rebuilding the engine I get this error when trying to open my project:

The following modules are missing or built with a different engine version:

  [My project]

Would you like to rebuild them now?

Even though it’s the same engine version (4.26). If I choose Yes then I get another error:

Engine modules are out of date, and cannot be compiled while the engine is running. Please build through your IDE.

But I don’t know how to do what it’s asking, and googling the error just gives me results about plugins and my project is not a plugin.

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