When I was trying to recreate these bugs in a private lobby I was able to recreate the wildlife not dropping loot and guards not having weapons, but not the time of day bug. It must have had to do with joining a lobby in progress, as I noticed sequencer bugs kept happening in solo lobbies but much more frequently in busy lobbies and joining in progress. Here are my settings though: day sequence device is set to start at 12, Time of day manager is Chapter 5, for island settings time of day is set to default.